[1] Namati, E., Chon, D., Thiesse, J., Hoffman,
E. A., de Ryk, J., Ross, A., and McLennan, G., "In vivo micro-CT lung
imaging via a computer-controlled intermittent iso-pressure breath hold (IIBH)
technique," Phys Med Biol, vol. 51, pp. 6061-75, 2006
[2] de Ryk, J., Thiesse, J., Namati, E., and McLennan, G.,
"Stress distribution in a three dimensional, geometric alveolar sac under
normal and emphysematous conditions," Int J Chron Obstruct Pulmon Dis,
vol. 2, pp. 81-91, 2007
[3] Namati, E., De Ryk, J., Thiesse, J., Towfic, Z., Hoffman,
E., and McLennan, G., "Large image microscope array for the compilation
of multimodality whole organ image databases," Anat Rec (Hoboken), vol.
290, pp. 1377-87, 2007
[4] Baker, K. M., Namati, E., Hoffman, E., Van Beek, E. J.
R., Ross, A., and McLennan, G., "Virtual bronchoscopy: new applications
for MDCT in pulmonology," Advances in MDCT, vol. 3, pp. 10-18, 2007
[5] McLennan, G., Namati, E., Ganatra, J., Suter, M., O'Brien,
E. E., Lecamwasam, K., Van Beek, E. J. R., and Hoffman, E., "Virtual
Bronchoscopy," MRI, vol. 11, pp. 10-20, 2007
[6] Namati, E., Thiesse, J., de Ryk, J., and McLennan, G.,
"Alveolar Dynamics during Respiration: Are the Pores of Kohn a Pathway
to Recruitment?," Am J Respir Cell Mol Biol, vol. 38, pp. 572-8, 2008
[7] Rogers, C. S., Abraham, W. M., Brogden, K. A., Engelhardt, J. F., Fisher,
J. T., McCray Jr, P. B., McLennan, G., Meyerholz, D. K., Namati, E.,
Ostedgaard, L. S., Prather, R. S., Sabater, J. R., Stoltz, D. A., Zabner,
J., and Welsh, M. J., "The Porcine Lung as a Potential Model for Cystic
Fibrosis," Am J Physiol Lung Cell Mol Physiol, 2008
[1] Namati, E., de Ryk, J., McLennan, G., Hoffman, E.,
and Piker, C., "A Novel Whole-organ Serial Sectioning and Image Acquisition
System.," presented at 2003 World Congress on Biomdeical Engineering
Proceedings, Sydney, Australia, 2003.
[2] Thiesse, J. R., Namati, E., de Ryk, J., Hoffman, E. A.,
and McLennan, G., "Bright field segmentation tomography (BFST) for use
as surface identification in stereomicroscopy," presented at Three-Dimensional
and Multidimensional Microscopy: Image Acquisition and Processing XI, San
Jose, CA, USA, 2004.
[3] de Ryk, J., Namati, E., Reinhardt, J. M., Piker, C.,
Xu, Y., Liu, L., Hoffman, E. A., and McLennan, G., "A whole organ serial
sectioning and imaging system for correlation of pathology to computer tomography,"
presented at Three-Dimensional and Multidimensional Microscopy: Image Acquisition
and Processing XI, San Jose, CA, USA, 2004.
[4] Namati, E. and Li, J., "A Novel Shape Descriptor
Based on Empty Morphological Skeleton Subsets," presented at 2004 International
Symposium on Intelligent Multimedia, Video and Speech Processing, Hong Kong,
2004.
[5] Thiesse, J., Reinhardt, J. M., de Ryk, J., Namati, E.,
Leinen, J., Recheis, W. A., Hoffman, E. A., and McLennan, G., "Three-dimensional
visual truth of the normal airway tree for use as a quantitative comparison
to micro-CT reconstructions," presented at Medical Imaging 2005: Physiology,
Function, and Structure from Medical Images, San Diego, CA, USA, 2005.
[6] Thiesse, J. R., de Ryk, J., Bond, S., Vislisel, J., Hoffman, E., Namati,
E., Reinhardt, J., and McLennan, G., "Assessment of mouse lung
fixation pressures using computed tomography," presented at American
Thoracic Society, San Diego, CA, 2005.
[7] de Ryk, J., Thiesse, J. R., Namati, E., Reinhardt, J.,
Hoffman, E., and McLennan, G., "A novel microscopy system for Assessing
the Accuracy of CT in soft tissue diagnostic imaging," presented at American
Thoracic Society, San Diego, CA, 2005.
[8] Namati, E., Chon, D., Thiesse, J., McLennan, G., Sieren,
J., Ross, A., and Hoffman, E. A., "In vivo micro-CT imaging of the murine
lung via a computer controlled intermittent iso-pressure breath hold (IIBH)
technique," presented at Medical Imaging 2006: Physiology, Function,
and Structure from Medical Images, San Diego, CA, USA, 2006.
[9] Namati, E., Chon, D., Thiesse, J., Ross, A., McLennan,
G., and Hoffman, E. A., "Comparison of Four Micro-CT Gating Techniques
for Physiologic and Anatomical Analysis of Mouse Lungs In-Vivo," presented
at American Thoracic Society, San Diego, CA, 2006.
[10] Chon, D., Namati, E., Fuld, M. K., Sieren, J., McLennan,
G., and Hoffman, E. A., "In Vivo Assessment of Regional Lung Function
in Mice Via Micro CT," presented at American Thoracic Society, San Diego,
CA, 2006.
[11] Thiesse, J., Namati, E., de Ryk, J., Hoffman, E., Reinhardt,
J., and McLennan, G., "Three Dimensional Anatomical Description of the
Normal Airway Tree in Three Strains of Mice," presented at Society for
Molecular Imaging, Hawaii, Big Island, 2006.
[12] Namati, E., Chon, D., Thiesse, J., Hoffman, E. A., Ross,
A., and McLennan, G., "In vivo micro-CT imaging of mice lungs using a
novel breath hold technique," presented at Society for Molecular Imaging,
Hawaii, Big Island, 2006.
[13] Namati, E., Thiesse, J., de Ryk, J., and McLennan, G.,
"Dynamic in vivo Alveolar Morphology Using a Novel Laser Scanning Confocal
Microscope," presented at 9th Biennial Conference of the Australian Pattern
Recognition Society on Digital Image Computing Techniques and Applications
(DICTA 2007), Adelaide, Australia, 2007.
[14] de Ryk, J., Weydert, J., Thiesse, J., Namati, E., Reinhardt,
J., Lynch, W., and McLennan, G., "Lung Adenocarcinoma: 3D Tissue Content
and Distribution," presented at American Thoracic Society, San Francisco,
CA, 2007.
[15] Namati, E., Thiesse, J., de Ryk, J., and McLennan, G.,
"Imaging of Fresh Intact Mice Lungs during Respiration," presented
at American Thoracic Society, San Francisco, CA, 2007.
[16] de Ryk, J., Raghavan, M., Reinhardt, J., Thiesse, J., Namati,
E., and McLennan, G., "A Finite Element Model of the Human Alveolar
Sac to Investigate Normal and Emphysematous States," presented at American
Thoracic Soceity, San Francisco, CA, 2007.
[17] Thiesse, J., Namati, E., de Ryk, J., Reinhardt, J.,
Hoffman, E., and McLennan, G., "3D Anatomy of the Normal Airway Tree
in Three Strains of Mice Using Micro-CT and Pathology Techniques," presented
at American Thoracic Society, San Francisco, CA, 2007.
[18] Namati, E., Thiesse, J., de Ryk, J., and McLennan, G.,
"In vivo imaging of alveoli," presented at American Thoracic Society,
San Francisco, CA, 2007.
[19] O'Brien, E. E., Reinhardt, J., Towfic, Z., Namati, E.,
Ferguson, J. S., and McLennan, G., "Quantitative Color and Texture Analysis
of Human Airways," presented at American Thoracic Society, San Francisco,
CA, 2007.
[20] de Ryk, J., Weydert, J., Christensen, G., Thiesse, J., Namati,
E., Reinhardt, J., Hoffman, E., and McLennan, G., "Three-dimensional
histopathology of lung cancer with multimodality image registration,"
presented at Medical Imaging 2007: Image Processing, San Diego, CA, USA, 2007.
[21] Namati, E., Thiesse, J., de Ryk, J., and McLennan, G.,
"In vivo and ex vivo imaging of alveolar structure and function using
a custom fiber optic laser scanning confocal microscope," presented at
Medical Imaging 2008: Physiology, Function, and Structure from Medical Images,
San Diego, CA, USA, 2008.
[22] de Ryk, J., Namati, E., Thiesse, J., Reinhardt, J.,
Hoffman, E., and McLennan, G., "Establishment of a Process Model for
the Collection of Multi-Modality Data Relating to Human Lung Cancer Nodules,"
presented at American Thoracic Society, Toronto, Canada, 2008.
[23] Namati, E., Thiesse, J., de Ryk, J., and McLennan, G.,
"Longitudinal Multi-Modality Three-Dimensional Imaging of Lung Cancer
in Mice," presented at American Thoracic Society, Toronto, Canada, 2008.
[24] Thiesse, J., Namati, E., de Ryk, J., Reinhardt, J.,
Hoffman, E., Shi, L., and McLennan, G., "Phenotype Characterization of
the Normal Lung in Three Strains of Mice Using Micro-CT and 3D Microscopy
Techniques," presented at American Thoracic Society, Toronto, Canada,
2008.
[25] de Ryk, J., Thiesse, J., Namati, E., Weydert, J., Reinhardt,
J., Hoffman, E., and McLennan, G., "Automated Classification of Lung
Cancer Histopathology with 3D Correlation to Density Representation in CT,"
presented at American Thoracic Society, Toronto, Canada, 2008.
[26] Namati, E., Thiesse, J., de Ryk, J., and McLennan, G.,
"In Vivo Catheter-Based Histopathology of Lung Cancer in Mice,"
presented at American Thoracic Society, Toronto, Canada, 2008.